| EpiEstim | Estimate Time Varying Reproduction Numbers from Epidemic Curves Anne Cori , Simon Cauchemez , Neil M. Ferguson , Christophe Fraser , Elisabeth Dahlqwist , P. Alex Demarsh , Thibaut Jombart , Zhian N. Kamvar , Justin Lessler , Shikun Li , Jonathan A. Polonsky , Jake Stockwin , Robin Thompson , Rolina van Gaalen |
| adegenet | Exploratory Analysis of Genetic and Genomic Data Thibaut Jombart , Zhian N. Kamvar , Caitlin Collins , Roman Lustrik , Marie-Pauline Beugin , Brian J. Knaus , Peter Solymos , Vladimir Mikryukov , Klaus Schliep , Tiago Maié , Libor Morkovsky , Ismail Ahmed , Anne Cori , Federico Calboli , RJ Ewing , Frédéric Michaud , Rebecca DeCamp , Alexandre Courtiol , Lindsay V. Clark , Pavel Dimens |
| apyramid | Visualize Population Pyramids Aggregated by Age Zhian N. Kamvar , Alex Spina |
| aweek | Convert Dates to Arbitrary Week Definitions Zhian N. Kamvar |
| coarseDataTools | Analysis of Coarsely Observed Data Nicholas G. Reich , Justin Lessler , Andrew Azman , Zhian N. Kamvar |
| earlyR | Estimation of Transmissibility in the Early Stages of a Disease Outbreak Thibaut Jombart , Anne Cori , Pierre Nouvellet , Janetta Skarp , Zhian N. Kamvar , Tim Taylor |
| epicontacts | Handling, Visualisation and Analysis of Epidemiological Contacts Finlay Campbell , Thibaut Jombart , Nistara Randhawa , Bertr , Sudre , VP Nagraj , Thomas Crellen , Zhian N. Kamvar |
| epiflows | Predicting Disease Spread from Flow Data Pawel Piatkowski , Paula Moraga , Isobel Blake , Thibaut Jombart , VP Nagraj , Zhian N. Kamvar , Salla E. Toikkanen |
| epikit | Miscellaneous Helper Tools for Epidemiologists Alexander Spina , Zhian N. Kamvar , Dirk Schumacher , Kate Doyle |
| epitrix | Small Helpers and Tricks for Epidemics Analysis Thibaut Jombart , Anne Cori , Zhian N. Kamvar , Dirk Schumacher , Flavio Finger , Charlie Whittaker |
| ezec | Easy Interface to Effective Concentration Calculations Zhian N. Kamvar , Niklaus J. Grunwald |
| hagis | Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity Austin G. McCoy , Zachary Noel , Adam H. Sparks , Martin Chilvers , Zhian N. Kamvar , Michigan Soybean Promotion Committee , Project GREEEN , North Central Soybean Research Program , GRDC Project DAQ00186 |
| hierfstat | Estimation and Tests of Hierarchical F-Statistics Jerome Goudet , Thibaut Jombart , Zhian N. Kamvar , Eric Archer , Olivier Hardy |
| incidence | Compute, Handle, Plot and Model Incidence of Dated Events Thibaut Jombart , Zhian N. Kamvar , Rich FitzJohn , Tim Taylor , Jun Cai , Sangeeta Bhatia , Jakob Schumacher , Juliet R.C. Pulliam |
| knitr | A General-Purpose Package for Dynamic Report Generation in R Yihui Xie , Abhraneel Sarma , Adam Vogt , Alastair Andrew , Alex Zvoleff , Amar Al-Zubaidi , Andre Simon , Aron Atkins , Aaron Wolen , Ashley Manton , Atsushi Yasumoto , Ben Baumer , Brian Diggs , Brian Zhang , Bulat Yapparov , Cassio Pereira , Christophe Dervieux , David Hall , David Hugh-Jones , David Robinson , Doug Hemken , Duncan Murdoch , Elio Campitelli , Ellis Hughes , Emily Riederer , Fabian Hirschmann , Fitch Simeon , Forest Fang , Frank E Harrell Jr , Garrick Aden-Buie , Gregoire Detrez , Hadley Wickham , Hao Zhu , Heewon Jeon , Henrik Bengtsson , Hiroaki Yutani , Ian Lyttle , Hodges Daniel , Jacob Bien , Jake Burkhead , James Manton , Jared Lander , Jason Punyon , Javier Luraschi , Jeff Arnold , Jenny Bryan , Jeremy Ashkenas , Jeremy Stephens , Jim Hester , Joe Cheng , Johannes Ranke , John Honaker , John Muschelli , Jonathan Keane , JJ Allaire , Johan Toloe , Jonathan Sidi , Joseph Larmarange , Julien Barnier , Kaiyin Zhong , Kamil Slowikowski , Karl Forner , Kevin K. Smith , Kirill Mueller , Kohske Takahashi , Lorenz Walthert , Lucas Gallindo , Marius Hofert , Martin Modrák , Michael Chirico , Michael Friendly , Michal Bojanowski , Michel Kuhlmann , Miller Patrick , Nacho Caballero , Nick Salkowski , Niels Richard Hansen , Noam Ross , Obada Mahdi , Pavel N. Krivitsky , Pedro Faria , Qiang Li , Ramnath Vaidyanathan , Richard Cotton , Robert Krzyzanowski , Rodrigo Copetti , Romain Francois , Ruaridh Williamson , Sagiru Mati , Scott Kostyshak , Sebastian Meyer , Sietse Brouwer , Simon de Bernard , Sylvain Rousseau , Taiyun Wei , Thibaut Assus , Thibaut Lamadon , Thomas Leeper , Tim Mastny , Tom Torsney-Weir , Trevor Davis , Viktoras Veitas , Weicheng Zhu , Wush Wu , Zachary Foster , Zhian N. Kamvar , Posit Software , PBC |
| matchmaker | Flexible Dictionary-Based Cleaning Zhian N. Kamvar , Thibaut Jombart , Patrick Barks |
| pegas | Population and Evolutionary Genetics Analysis System Emmanuel Paradis , Thibaut Jombart , Zhian N. Kamvar , Brian Knaus , Klaus Schliep , Alastair Potts , David Winter |
| poppr | Genetic Analysis of Populations with Mixed Reproduction Zhian N. Kamvar , Javier F. Tabima , Sydney E. Everhart , Jonah C. Brooks , Stacy A. Krueger-Hadfield , Erik Sotka , Brian J. Knaus , Patrick G. Meirmans , Frédéric D. Chevalier , David Folarin , Niklaus J. Grünwald |
| projections | Project Future Case Incidence Thibaut Jombart , Pierre Nouvellet , Sangeeta Bhatia , Zhian N. Kamvar , Tim Taylor , Stephane Ghozzi |
| rticles | Article Formats for R Markdown JJ Allaire , Yihui Xie , Christophe Dervieux , Posit Software , PBC , R Foundation , Hadley Wickham , Journal of Statistical Software , Ramnath Vaidyanathan , Association for Computing Machinery , Carl Boettiger , Elsevier , Karl Broman , Kirill Mueller , Bastiaan Quast , Randall Pruim , Ben Marwick , Charlotte Wickham , Oliver Keyes , Miao Yu , Daniel Emaasit , Thierry Onkelinx , Alessandro Gasparini , Marc-Andre Desautels , Dominik Leutnant , MDPI , Taylor , Francis , Oğuzhan Öğreden , Dalton Hance , Daniel Nüst , Petter Uvesten , Elio Campitelli , John Muschelli , Alex Hayes , Zhian N. Kamvar , Noam Ross , Robrecht Cannoodt , Duncan Luguern , David M. Kaplan , Sebastian Kreutzer , Shixiang Wang , Jay Hesselberth , Alfredo Hernández , Stefano Coretta , Greg Macfarlane , Matthias Templ , Alvaro Uzaheta , JooYoung Seo , Callum Arnold , Rob Hyndman , Dmytro Perepolkin , Tom Palmer |
| tinkr | Cast '(R)Markdown' Files to 'XML' and Back Again Maëlle Salmon , Zhian N. Kamvar , Jeroen Ooms , Nick Wellnhofer , rOpenSci , Peter Daengeli |
| vcfR | Manipulate and Visualize VCF Data Brian J. Knaus , Niklaus J. Grunwald , Eric C. Anderson , David J. Winter , Zhian N. Kamvar , Javier F. Tabima |
| xaringan | Presentation Ninja Yihui Xie , Posit Software , PBC , Alessandro Gasparini , Benjie Gillam , Claus Thorn Ekstrøm , Daniel Anderson , Dawei Lang , Deo Salil , Emi Tanaka , Garrick Aden-Buie , Iñaki Ucar , John Little , Joselyn Chávez , Joseph Casillas , JooYoung Seo , Lucy D'Agostino McGowan , Malcolm Barrett , Matthew Mark Strasiotto , Michael Wayne Kearney , Nan-Hung Hsieh , Ole Petter Bang , Orlando Olaya Bucaro , Patrick Schratz , Paul Klemm , Paul Lemmens , Robert Fromont , Sean Lopp , Silvia Canelon , Susan VanderPlas , Tuo Wang , Waldir Leoncio , Yongfu Liao , Yue Jiang , Zhian N. Kamvar |
| yaml | Methods to Convert R Data to YAML and Back Shawn P Garbett , Jeremy Stephens , Kirill Simonov , Yihui Xie , Zhuoer Dong , Hadley Wickham , Jeffrey Horner , reikoch , Will Beasley , Brendan O'Connor , Gregory R. Warnes , Michael Quinn , Zhian N. Kamvar |